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Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
by
Benjamin
▴
20
I had access temporarily to the rat genome, but now it looks like ensemble 113 is completely down as I have this error:
Error : Your q…
Comment: Deseq2 Design
by
pm_25
•
0
Thanks James for the prompt answer! your explanation makes more sense. in your example, when creating the interactions:
```r
results(dds,…
Answer: Standardization of rlog transformed counts before PCA
by
Michael Love
43k
VST and rlog contain scaling for sequencing depth.
Answer: Limma - using both array and spot weights in lmFit
by
Gordon Smyth
52k
Was answered here: https://support.bioconductor.org/p/17028/
Answer: Margins for gene_set_enrichment_plot
by
Leonardo Collado Torres
★
1.1k
Hi,
In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
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